I am running AHP 3.228 with CM15A and latest drivers on Windows 7 platform. The switches are XPS3 and that's how I have them set up in AHP. I know the receivers are working correctly because my Radioshack PlugnPlay controller operates them remotely.
I would suspect a signal propagation or noise issue first, before suspecting a software issue. Did anything else change in your setup at the time you changed the switches (new bulbs, new fixtures, etc)?
If you turn the switches on (either manually or using the RadioShack controller), can you turn any of them off using the software?
Are the new switches on the same Housecode/UnitCode combination as each of the switches they replaced?
Is the rest of your setup (other than the new switches) working properly from the software?
Does the problem only happen during certain times of day?
Can you try swapping one of the old switches back in, and seeing if that works correctly?
I would try Brian H's suggestion of making sure you are using the RadioShack controller in the same outlet as the CM15A. However, I wouldn't be surprised if the RadioShack controller puts out a stronger signal on the line than the CM15A, so you might not get a true answer from that test (unless it DOESN'T work from the same outlet).